Posts – Personal blog of Walter Muskovic

Does this thing still work?

hiatus over

It’s been a minute. Just converted all my old blog posts from R Markdown to Quarto. Let’s see if this still works.

Walter Muskovic

Seurat’s AddModuleScore function

bioinformatics

scRNA-seq

Seurat

When annotating cell types in a new scRNA-seq dataset we often want to check the expression of characteristic marker genes. In some cases we might have a list of genes that…

Walter Muskovic

Making GIFs in R

animation

GIF

plots

I recently tried out the gganimate R package and made some simple dynamic plots. Today I want to try out two other packages; gifski and magick, to see how easy it is to…

Walter Muskovic

Trying out gganimate

gganimate

ggplot

scRNA-seq

I keep putting off trying out the gganimate R package, but today’s the day. To make it more fun, rather than use the iris dataset as they’ve done in the package vignette…

Walter Muskovic